PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G024600.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 438aa    MW: 48503.6 Da    PI: 8.8462
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G024600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17115164155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sobic.009G024600.5.p 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                           78*******************......55************************997 PP

2AP241.43.6e-13208258155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Sobic.009G024600.5.p 208 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 258
                           89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-9115164IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-16115173IPR016177DNA-binding domain
SMARTSM003803.3E-32116178IPR001471AP2/ERF domain
CDDcd000187.41E-11116174No hitNo description
Gene3DG3DSA:3.30.730.103.0E-17116173IPR001471AP2/ERF domain
PROSITE profilePS5103217.794116172IPR001471AP2/ERF domain
PfamPF008471.1E-8208258IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17208267IPR016177DNA-binding domain
CDDcd000184.69E-25208268No hitNo description
SMARTSM003801.8E-32209272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-16209266IPR001471AP2/ERF domain
PROSITE profilePS5103215.527209266IPR001471AP2/ERF domain
PRINTSPR003674.3E-6210221IPR001471AP2/ERF domain
PRINTSPR003674.3E-6248268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
SDSDAAGADD DDDATPSPPP HHHQHHHHQH HHQQQLVTRE LFPAGTGPPL PSPQHWAELG  60
FFRADPPRPH QQQPDIRILP HPHQHPHATP PVAPPPPVQP QPAKKSRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEDDM  180
KQQMKSLSKE EFVHVLRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  240
SEVEAARAYD KAAIKCNGRE AVTNFEPSTY DGELLTEVST EVAEVDLNLS ISQPASQSPK  300
RDKSCLGLQL HHGSFEGSES KKTKIDTPSE LSGHPHRFPL MTEHPPAWPA QSHPFFTNHE  360
STSSRDLNRR PEGGAPSWAW KVTAAPPHTL PLPLFSSSSS SAAASSGFSN TATTAAPSAS  420
LRFDAPPSSS SSHHHRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.52570.0embryo| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2676410.0KM267641.1 Dendrocalamus latiflorus transcription factor AP2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656536.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotP479278e-97AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0N7BW920.0A0A0N7BW92_DENLA; Transcription factor AP2
STRINGSi025305m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-99related to AP2.7